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9 Views· 04 July 2022

Galaxy for microbiome via ASaiM story - From a local project to a global effort

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Presented by Dr Bérénice Batut on 9 June 2021 as part of the "Holistic Bioinformatic Approaches used in Microbiome Research" conference presented by the Bioinformatics Virtual Coordination Network.

Dr. Berenice Batut describes the multi-year process of developing the ASaiM workflow, how she chose the Galaxy bioinformatics platform, and how that decision shaped the development of the project.

For more information on ASaiM, visit the following links:
ASaiM paper - https://academic.oup.com/gigas....cience/article/7/6/g
ASaiM-MT paper - https://f1000research.com/articles/10-103
Documentation website - https://asaim.readthedocs.io/en/latest/
Github - https://github.com/ASaiM/framework

For more information on Galaxy, see these resources:
Galaxy main sites- https://usegalaxy.eu/  ||  https://usegalaxy.org/  ||  https://usegalaxy.org.au/  || 
ASaiM Galaxy Hub - https://galaxyproject.org/use/asaim/
Galaxy Training Network - https://training.galaxyproject.org/
Galaxy for Microbiome: https://microbiome.usegalaxy.eu/
GalaxyP Project- http://galaxyp.org/

The BeerDECoded project- https://streetscience.communit....y/projects/beerdecod

For a more general introduction into some of the concepts discussed in Dr. Berenice Batut's talk, visit the BVCN "metagenomics" topic
https://github.com/biovcnet/bi....ovcnet.github.io/wik

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